| 1. | Super Mario 64 | 38,416,081 | 32.97% | 7 | 4:59:41 |
| 2. | Super Mario Bros. 3 | 7,073,089 | 6.07% | 8 | 5:09:07 |
| 3. | Super Mario Bros. 2 | 6,569,125 | 5.64% | 12 | 2:52:11 |
| 4. | Diddy Kong Racing | 2,850,956 | 2.45% | 1 | 2:09:54 |
| 5. | Super Mario World | 2,294,085 | 1.97% | 12 | 6:24:07 |
| 6. | Mortal Kombat 4 | 1,533,308 | 1.32% | 2 | 14:17 |
| 7. | Excitebike | 1,461,320 | 1.25% | 1 | 5:47 |
| 8. | Punch-Out!! | 1,294,367 | 1.11% | 3 | 57:24 |
| 9. | Killer Instinct | 1,250,493 | 1.07% | 3 | 35:09 |
| 10. | Ultimate Mortal Kombat 3 | 1,207,368 | 1.04% | 6 | 1:44:32 |
| 11. | Mario Kart 64 | 1,196,551 | 1.03% | 1 | 9:42 |
| 12. | Sonic the Hedgehog 3 | 1,143,390 | 0.98% | 8 | 5:57:43 |
| 13. | Street Fighter II | 1,087,780 | 0.93% | 6 | 1:05:32 |
| 14. | Mortal Kombat Trilogy | 933,404 | 0.80% | 2 | 37:52 |
| 15. | Super Mario Kart | 793,843 | 0.68% | 2 | 1:45:31 |
| 16. | Super Mario RPG | 775,141 | 0.67% | 4 | 10:46:26 |
| 17. | Dragon Ball: Advanced Adventure | 736,975 | 0.63% | 1 | 47:19 |
| 18. | Super Mario World 2: Yoshi's Island | 650,353 | 0.56% | 6 | 4:01:43 |
| 19. | New Super Mario Bros. | 645,239 | 0.55% | 4 | 2:12:24 |
| 20. | Super Street Fighter II Turbo | 591,412 | 0.51% | 2 | 21:01 |
| 21. | Super Mario Bros. | 558,188 | 0.48% | 20 | 3:18:54 |
| 22. | Mario Pinball Land | 538,311 | 0.46% | 2 | 17:42 |
| 23. | Mortal Kombat Mythologies: Sub-Zero | 487,634 | 0.42% | 2 | 1:06:58 |
| 24. | Tomb Raider: The Angel of Darkness | 486,722 | 0.42% | 2 | 3:49:54 |
| 25. | Mega Man 3 | 474,006 | 0.41% | 4 | 2:23:03 |
| 26. | Mortal Kombat II | 471,375 | 0.40% | 4 | 1:04:29 |
| 27. | Paper Mario | 455,066 | 0.39% | 1 | 4:12:06 |
| 28. | Mega Man 7 | 404,411 | 0.35% | 4 | 1:59:39 |
| 29. | Mega Man X2 | 401,398 | 0.34% | 2 | 1:15:39 |
| 30. | The Legend of Zelda: Majora's Mask | 396,739 | 0.34% | 2 | 3:59:20 |
| 31. | Punch-Out!! | 382,580 | 0.33% | 1 | 41:47 |
| 32. | Star Fox | 379,234 | 0.33% | 1 | 25:11 |
| 33. | Mega Man X5 | 370,324 | 0.32% | 6 | 3:13:53 |
| 34. | Sonic the Hedgehog | 366,288 | 0.31% | 7 | 2:14:07 |
| 35. | Mega Man X4 | 345,425 | 0.30% | 3 | 2:04:42 |
| 36. | The Legend of Zelda: Ocarina of Time | 344,685 | 0.30% | 4 | 7:16:11 |
| 37. | Metroid: Zero Mission | 337,606 | 0.29% | 6 | 4:27:34 |
| 38. | Earthbound | 335,454 | 0.29% | 5 | 2:42:23 |
| 39. | Sonic Advance | 334,758 | 0.29% | 6 | 1:40:40 |
| 40. | Luigi's Mansion | 332,305 | 0.29% | 2 | 1:57:27 |
| 41. | Super Street Fighter II | 320,990 | 0.28% | 3 | 32:24 |
| 42. | Teenage Mutant Ninja Turtles | 318,694 | 0.27% | 5 | 1:52:52 |
| 43. | Pokémon Ruby and Sapphire | 314,994 | 0.27% | 2 | 3:17:52 |
| 44. | Marvel Super Heroes vs. Street Fighter | 314,013 | 0.27% | 2 | 28:53 |
| 45. | Zelda II: The Adventure of Link | 308,763 | 0.26% | 5 | 2:35:40 |
| 46. | Mega Man X | 302,338 | 0.26% | 5 | 3:28:57 |
| 47. | Mega Man 5 | 295,570 | 0.25% | 3 | 1:58:41 |
| 48. | Super Punch-Out!! | 288,521 | 0.25% | 1 | 19:41 |
| 49. | The Mask | 276,044 | 0.24% | 1 | 8:23 |
| 50. | Dungeons & Dragons: Shadow over Mystara | 273,161 | 0.23% | 2 | 38:43 |
| 51. | Metroid | 271,383 | 0.23% | 3 | 38:27 |
| 52. | Streets of Rage 2 | 268,516 | 0.23% | 4 | 1:57:01 |
| 53. | Mega Man X3 | 263,242 | 0.23% | 2 | 1:29:49 |
| 54. | Super Smash Bros. | 258,410 | 0.22% | 2 | 20:02 |
| 55. | Mega Man X7 | 247,375 | 0.21% | 1 | 1:40:59 |
| 56. | Mega Man 2 | 247,036 | 0.21% | 5 | 2:15:14 |
| 57. | Metal Slug X | 240,567 | 0.21% | 2 | 47:03 |
| 58. | Super Mario Land 2: 6 Golden Coins | 228,276 | 0.20% | 9 | 1:52:57 |
| 59. | Banjo-Kazooie | 228,047 | 0.20% | 1 | 2:39:07 |
| 60. | Dragon Quest III: The Seeds of Salvation | 227,657 | 0.20% | 3 | 4:43:48 |
| 61. | Kirby's Dream Course | 227,254 | 0.20% | 3 | 3:38:34 |
| 62. | GoldenEye 007 | 222,234 | 0.19% | 2 | 1:01:36 |
| 63. | Wario Land 4 | 214,834 | 0.18% | 2 | 1:58:49 |
| 64. | Teenage Mutant Ninja Turtles III: The Manhattan Project | 213,362 | 0.18% | 1 | 33:34 |
| 65. | Mega Man 4 | 210,683 | 0.18% | 5 | 3:40:38 |
| 66. | Mega Man Zero 2 | 209,583 | 0.18% | 2 | 1:54:48 |
| 67. | Disney's Aladdin | 208,163 | 0.18% | 3 | 51:09 |
| 68. | The Simpsons: Bart's Nightmare | 207,367 | 0.18% | 1 | 16:43 |
| 69. | Castlevania | 207,070 | 0.18% | 1 | 22:56 |
| 70. | Mega Man | 203,409 | 0.17% | 5 | 1:25:54 |
| 71. | Mega Man 10 | 197,569 | 0.17% | 2 | 1:13:35 |
| 72. | Adventure Island 3 | 194,630 | 0.17% | 1 | 20:29 |
| 73. | E.V.O.: Search for Eden | 193,745 | 0.17% | 4 | 1:18:13 |
| 74. | The SpongeBob SquarePants Movie | 189,690 | 0.16% | 2 | 58:29 |
| 75. | Castlevania: Harmony of Dissonance | 186,699 | 0.16% | 8 | 1:28:34 |
| 76. | Prince of Persia | 186,620 | 0.16% | 3 | 1:17:26 |
| 77. | Mega Man Zero 4 | 183,337 | 0.16% | 1 | 39:43 |
| 78. | Super Bomberman | 181,082 | 0.16% | 3 | 2:44:39 |
| 79. | Sonic the Hedgehog 2 | 180,136 | 0.15% | 5 | 1:54:55 |
| 80. | Tiny Toon Adventures: Buster Busts Loose! | 177,455 | 0.15% | 1 | 23:50 |
| 81. | Mega Man Zero | 176,100 | 0.15% | 3 | 1:21:05 |
| 82. | Capcom Arcade Stadium | 175,378 | 0.15% | 1 | 12:07 |
| 83. | X-Men vs. Street Fighter | 175,024 | 0.15% | 1 | 14:13 |
| 84. | Donkey Kong Country | 174,954 | 0.15% | 5 | 2:53:22 |
| 85. | Mystical Ninja Starring Goemon | 171,618 | 0.15% | 2 | 3:28:59 |
| 86. | Pokémon Gold and Silver | 171,411 | 0.15% | 2 | 3:33:55 |
| 87. | Marvel Super Heroes In War of the Gems | 168,996 | 0.15% | 1 | 21:16 |
| 88. | Circus Charlie | 167,835 | 0.14% | 1 | 3:33 |
| 89. | Metroid II: Return of Samus | 166,203 | 0.14% | 3 | 2:13:13 |
| 90. | Final Fight 3 | 165,047 | 0.14% | 2 | 40:07 |
| 91. | Sonic Spinball | 161,801 | 0.14% | 2 | 18:17 |
| 92. | Ice Climber | 158,258 | 0.14% | 1 | 19:30 |
| 93. | Metroid Fusion | 153,183 | 0.13% | 3 | 4:22:25 |
| 94. | Super Bomberman 4 | 150,610 | 0.13% | 2 | 41:37 |
| 95. | Metal Slug 3 | 149,668 | 0.13% | 1 | 31:05 |
| 96. | Sonic Advance 3 | 147,626 | 0.13% | 1 | 41:21 |
| 97. | X-Men: Mutant Apocalypse | 145,989 | 0.13% | 2 | 38:19 |
| 98. | Mega Man Xtreme | 145,684 | 0.13% | 2 | 29:15 |
| 99. | Final Fantasy V | 143,788 | 0.12% | 2 | 8:18:25 |
| 100. | Turok: Dinosaur Hunter | 143,340 | 0.12% | 2 | 1:32:58 |
