| 1. | Super Mario World | 7,563,070 | 29.49% | 1 | 3:25:13 |
| 2. | Super Mario 64 | 4,037,513 | 15.74% | 1 | 5:56:47 |
| 3. | The Legend of Zelda: The Minish Cap | 1,666,464 | 6.50% | 1 | 11:58:24 |
| 4. | Wolfenstein 3D | 1,204,193 | 4.70% | 1 | 7:05:36 |
| 5. | The Embodiment of Scarlet Devil | 883,574 | 3.45% | 2 | 1:05:16 |
| 6. | Imperishable Night | 570,737 | 2.23% | 4 | 1:51:34 |
| 7. | Lemmings | 501,301 | 1.95% | 2 | 7:27:01 |
| 8. | Perfect Cherry Blossom | 441,615 | 1.72% | 4 | 2:35:03 |
| 9. | Castlevania: Symphony of the Night | 378,133 | 1.47% | 4 | 19:49:55 |
| 10. | Ten Desires | 374,746 | 1.46% | 2 | 1:31:31 |
| 11. | The Legend of Zelda: Majora's Mask | 363,817 | 1.42% | 3 | 21:52:42 |
| 12. | Legacy of Lunatic Kingdom | 357,088 | 1.39% | 1 | 1:31:30 |
| 13. | Mountain of Faith | 333,697 | 1.30% | 5 | 2:07:18 |
| 14. | Subterranean Animism | 296,998 | 1.16% | 2 | 1:35:07 |
| 15. | Double Dealing Character | 260,645 | 1.02% | 1 | 1:13:26 |
| 16. | Undefined Fantastic Object | 256,679 | 1.00% | 2 | 1:43:29 |
| 17. | Phantasmagoria of Flower View | 226,026 | 0.88% | 15 | 6:24:06 |
| 18. | Earthbound | 212,916 | 0.83% | 4 | 19:38:35 |
| 19. | Chip's Challenge | 195,560 | 0.76% | 1 | 6:30:23 |
| 20. | Transport Tycoon | 129,770 | 0.51% | 2 | 20:09:15 |
| 21. | Rayman | 108,586 | 0.42% | 1 | 4:02:41 |
| 22. | Hidden Star in Four Seasons | 92,751 | 0.36% | 1 | 1:12:18 |
| 23. | Lotus Land Story | 83,407 | 0.33% | 5 | 2:37:54 |
| 24. | Army Men: Sarge's Heroes | 82,382 | 0.32% | 1 | 4:00:56 |
| 25. | Chrono Trigger | 68,175 | 0.27% | 3 | 18:32:34 |
| 26. | Fairy Wars | 64,256 | 0.25% | 4 | 1:04:42 |
| 27. | Secret Agent | 61,174 | 0.24% | 1 | 2:59:56 |
| 28. | Final Fantasy | 54,921 | 0.21% | 2 | 19:53:02 |
| 29. | Impossible Spell Card | 53,881 | 0.21% | 1 | 38:10 |
| 30. | Double Spoiler | 46,340 | 0.18% | 11 | 2:18:57 |
| 31. | Wario Land II | 43,584 | 0.17% | 1 | 8:58:17 |
| 32. | Wario Land 3 | 43,485 | 0.17% | 2 | 8:20:55 |
| 33. | Army Men: Sarge's Heroes 2 | 40,661 | 0.16% | 1 | 1:48:47 |
| 34. | Shoot the Bullet | 39,088 | 0.15% | 1 | 24:00 |
| 35. | The Legend of Zelda: Ocarina of Time | 37,958 | 0.15% | 2 | 16:59:14 |
| 36. | Mario Kart 64 | 22,329 | 0.09% | 2 | 55:59 |
| 37. | Super Mario Bros. 2 | 18,610 | 0.07% | 1 | 1:20:42 |
| 38. | Super Mario Bros. 3 | 16,575 | 0.06% | 1 | 2:55:47 |
| 39. | Diablo II | 15,422 | 0.06% | 1 | 4:08 |
| 40. | Zone Raiders | 15,177 | 0.06% | 1 | 3:17:38 |
| 41. | The Legend of Zelda: Oracle of Ages | 13,385 | 0.05% | 2 | 21:53:28 |
| 42. | The Legend of Zelda: Link's Awakening | 12,836 | 0.05% | 1 | 6:59:40 |
| 43. | Highly Responsive to Prayers | 11,653 | 0.05% | 3 | 44:49 |
| 44. | Tales of Phantasia | 8,888 | 0.03% | 3 | 1:04:36:46 |
| 45. | Final Fantasy VI | 8,766 | 0.03% | 4 | 1:13:22:29 |
| 46. | Castlevania: Aria of Sorrow | 8,384 | 0.03% | 2 | 13:08:48 |
| 47. | The Legend of Zelda: Oracle of Seasons | 7,755 | 0.03% | 2 | 20:23:56 |
| 48. | Super Mario Bros. | 6,804 | 0.03% | 1 | 39:29 |
| 49. | The Legend of Zelda: A Link to the Past | 4,304 | 0.02% | 1 | 6:26:19 |
| 50. | Final Fantasy V | 3,280 | 0.01% | 3 | 1:06:56:25 |
| 51. | Final Fantasy IV: The After Years | 2,955 | 0.01% | 2 | 14:35:15 |
| 52. | Wario Land 4 | 2,764 | 0.01% | 1 | 11:32:49 |
| 53. | Yoshi's Island: Super Mario Advance 3 | 2,213 | 0.01% | 1 | 9:12:51 |
| 54. | Scarlet Weather Rhapsody | 1,715 | 0.01% | 6 | 2:10:52 |
| 55. | Gran Turismo 3: A-Spec | 831 | 0.00% | 1 | 1:59 |
| 56. | Mario & Luigi: Superstar Saga | 375 | 0.00% | 2 | 15:48:54 |
