| 1. | Metroid Fusion | 40,071 | 11.11% | 19 | 7:45:20 |
| 2. | Ratchet & Clank: Rift Apart | 31,498 | 8.73% | 9 | 3:52:19 |
| 3. | Pokémon FireRed and LeafGreen | 30,525 | 8.46% | 59 | 15:57:38 |
| 4. | Metroid Prime Hunters | 27,864 | 7.72% | 23 | 10:12:25 |
| 5. | Mother 3 | 22,084 | 6.12% | 1 | 1:21 |
| 6. | The Legend of Zelda: A Link to the Past | 19,348 | 5.36% | 101 | 21:36:55 |
| 7. | The Legend of Zelda: Ocarina of Time | 18,108 | 5.02% | 69 | 1:19:47:22 |
| 8. | Final Fantasy II | 8,939 | 2.48% | 168 | 1:15:48:24 |
| 9. | Final Fantasy | 8,427 | 2.34% | 207 | 1:21:58:02 |
| 10. | Castlevania: The Adventure ReBirth | 7,852 | 2.18% | 1 | 7:54 |
| 11. | The Legend of Zelda: Oracle of Ages | 5,784 | 1.60% | 129 | 1:22:38:33 |
| 12. | Dragon Quest VIII: The Journey of the Cursed King | 5,099 | 1.41% | 73 | 1:19:19:24 |
| 13. | The Legend of Zelda: Majora's Mask | 4,985 | 1.38% | 43 | 1:07:50:14 |
| 14. | Super Mario World | 3,860 | 1.07% | 83 | 3:58:00 |
| 15. | Final Fantasy VI | 3,674 | 1.02% | 200 | 1:17:47:14 |
| 16. | Super Mario Bros. | 3,669 | 1.02% | 7 | 38:04 |
| 17. | Pokémon Emerald | 3,408 | 0.94% | 12 | 3:10:57 |
| 18. | Super Metroid | 3,143 | 0.87% | 24 | 10:08:05 |
| 19. | The Legend of Zelda: The Wind Waker | 3,116 | 0.86% | 60 | 1:21:07:32 |
| 20. | The Legend of Zelda: The Minish Cap | 3,028 | 0.84% | 80 | 1:03:16:59 |
| 21. | The Legend of Zelda: Twilight Princess | 2,912 | 0.81% | 71 | 2:11:57:37 |
| 22. | Castlevania: Aria of Sorrow | 2,805 | 0.78% | 19 | 9:02:20 |
| 23. | Dragon Quest VI: Realms of Revelation | 2,599 | 0.72% | 17 | 8:16:52 |
| 24. | Banjo-Kazooie | 2,576 | 0.71% | 38 | 21:16:15 |
| 25. | Jet Force Gemini | 2,494 | 0.69% | 35 | 19:19:20 |
| 26. | The Legend of Zelda: Four Swords Adventures | 2,274 | 0.63% | 73 | 1:02:46:48 |
| 27. | Super Smash Bros. Melee | 2,241 | 0.62% | 7 | 3:14:53 |
| 28. | The Legend of Zelda | 2,192 | 0.61% | 98 | 19:21:52 |
| 29. | Romancing SaGa 2 | 2,139 | 0.59% | 80 | 1:14:11:58 |
| 30. | Castlevania: Dawn of Sorrow | 2,029 | 0.56% | 4 | 22:52 |
| 31. | Romancing SaGa 3 | 1,962 | 0.54% | 84 | 1:18:30:04 |
| 32. | Super Mario World 2: Yoshi's Island | 1,869 | 0.52% | 57 | 7:42:08 |
| 33. | Super Mario 64 | 1,834 | 0.51% | 67 | 1:06:21:28 |
| 34. | Super Mario Galaxy 2 | 1,728 | 0.48% | 55 | 18:56:10 |
| 35. | Mario Bros. | 1,622 | 0.45% | 41 | 2:05:57 |
| 36. | The Missing Link | 1,591 | 0.44% | 3 | 55:56 |
| 37. | Final Fantasy IV: The After Years | 1,565 | 0.43% | 50 | 13:11:07 |
| 38. | Live A Live | 1,558 | 0.43% | 34 | 12:19:47 |
| 39. | Dark Souls | 1,502 | 0.42% | 139 | 2:14:25:04 |
| 40. | Dragon Quest | 1,469 | 0.41% | 43 | 13:55:57 |
| 41. | Super Scribblenauts | 1,420 | 0.39% | 2 | 4:06 |
| 42. | Azure Striker Gunvolt | 1,297 | 0.36% | 48 | 1:00:12:36 |
| 43. | Age of Empires | 1,269 | 0.35% | 13 | 6:36:14 |
| 44. | The Legend of Zelda: Link's Awakening | 1,090 | 0.30% | 48 | 16:32:20 |
| 45. | Banjo-Tooie | 1,076 | 0.30% | 30 | 19:54:15 |
| 46. | Zelda II: The Adventure of Link | 956 | 0.26% | 56 | 1:01:21:13 |
| 47. | Final Fantasy V | 883 | 0.24% | 94 | 1:15:42:43 |
| 48. | Final Fantasy Tactics | 843 | 0.23% | 85 | 1:15:17:56 |
| 49. | The Legend of Zelda: Oracle of Seasons | 841 | 0.23% | 38 | 13:39:11 |
| 50. | Age of Mythology | 789 | 0.22% | 5 | 13:16 |
| 51. | Castlevania: Harmony of Dissonance | 765 | 0.21% | 13 | 7:03:32 |
| 52. | ActRaiser | 751 | 0.21% | 52 | 9:26:44 |
| 53. | Super Mario Galaxy | 724 | 0.20% | 38 | 13:37:23 |
| 54. | Final Fantasy VII | 702 | 0.19% | 30 | 9:05:50 |
| 55. | Azure Striker Gunvolt 2 | 691 | 0.19% | 65 | 1:07:36:11 |
| 56. | Romancing SaGa | 657 | 0.18% | 9 | 2:06:26 |
| 57. | Castlevania: Rondo of Blood | 641 | 0.18% | 27 | 5:18:48 |
| 58. | Mega Man ZX | 634 | 0.18% | 40 | 11:57:01 |
| 59. | Chrono Trigger | 625 | 0.17% | 10 | 50:32 |
| 60. | Blossom Tales: The Sleeping King | 604 | 0.17% | 13 | 8:39:23 |
| 61. | The Dig | 589 | 0.16% | 1 | 1:35 |
| 62. | Donkey Kong 64 | 589 | 0.16% | 2 | 36:22 |
| 63. | The Legend of Zelda: A Link Between Worlds | 530 | 0.15% | 2 | 11:57 |
| 64. | Sonic the Hedgehog | 522 | 0.14% | 23 | 5:31:28 |
| 65. | Metroid: Zero Mission | 480 | 0.13% | 20 | 5:27:15 |
| 66. | Metroid Prime | 466 | 0.13% | 69 | 1:10:21:48 |
| 67. | Castlevania: Symphony of the Night | 457 | 0.13% | 4 | 29:37 |
| 68. | The Legend of Zelda: Four Swords | 451 | 0.12% | 12 | 3:51:36 |
| 69. | Batman: Arkham City | 423 | 0.12% | 45 | 1:04:03:45 |
| 70. | Rome: Total War | 398 | 0.11% | 24 | 14:22:34 |
| 71. | Rocket: Robot on Wheels | 394 | 0.11% | 6 | 3:49:07 |
| 72. | Final Fantasy IV | 390 | 0.11% | 31 | 14:36:41 |
| 73. | Mega Man V | 375 | 0.10% | 14 | 2:16:43 |
| 74. | Spyro 2: Ripto's Rage! | 350 | 0.10% | 28 | 10:17:19 |
| 75. | Trials of Mana | 337 | 0.09% | 56 | 1:04:12:22 |
| 76. | Vampire Killer | 298 | 0.08% | 1 | 4:26 |
| 77. | Pokémon Crystal | 288 | 0.08% | 61 | 1:03:12:58 |
| 78. | Abzû | 276 | 0.08% | 6 | 2:52:06 |
| 79. | Final Fantasy III | 274 | 0.08% | 31 | 12:54:33 |
| 80. | Mega Man 3 | 271 | 0.08% | 21 | 2:33:00 |
| 81. | Super Mario RPG | 259 | 0.07% | 1 | 3:03 |
| 82. | Mega Man IV | 257 | 0.07% | 11 | 2:47:58 |
| 83. | Mega Man | 257 | 0.07% | 18 | 2:58:41 |
| 84. | Yume Nikki | 256 | 0.07% | 12 | 4:23:38 |
| 85. | Metroid Prime 2: Echoes | 254 | 0.07% | 23 | 12:55:08 |
| 86. | Mega Man 9 | 251 | 0.07% | 13 | 3:19:55 |
| 87. | Mega Man ZX Advent | 247 | 0.07% | 42 | 19:54:44 |
| 88. | Secret of Mana | 240 | 0.07% | 4 | 18:40 |
| 89. | Spyro: Year of the Dragon | 235 | 0.07% | 40 | 10:36:13 |
| 90. | Shovel Knight | 233 | 0.06% | 41 | 7:48:48 |
| 91. | A Hat in Time | 230 | 0.06% | 21 | 11:37:46 |
| 92. | Minecraft | 230 | 0.06% | 12 | 1:28:38 |
| 93. | Mega Man X6 | 186 | 0.05% | 23 | 6:38:21 |
| 94. | Mega Man Zero | 180 | 0.05% | 16 | 4:13:49 |
| 95. | Gunvolt Chronicles: Luminous Avenger iX 2 | 178 | 0.05% | 41 | 8:52:28 |
| 96. | Final Fantasy IV | 174 | 0.05% | 19 | 3:28:25 |
| 97. | Castlevania: Circle of the Moon | 169 | 0.05% | 18 | 9:49:46 |
| 98. | Treasure of the Rudras | 167 | 0.05% | 2 | 4:49 |
| 99. | Pokémon Yellow | 167 | 0.05% | 34 | 14:28:32 |
| 100. | Mighty No. 9 | 164 | 0.05% | 1 | 37:38 |
