| 1. | Dragon Quest IV: Chapters of the Chosen | 487,500 | 2.28% | 172 | 3:15:19:39 |
| 2. | Captain Tsubasa Vol. II: Super Striker | 461,797 | 2.16% | 171 | 2:17:53:35 |
| 3. | The Legend of the Quiz Tournament of Champions | 356,744 | 1.67% | 118 | 1:21:59:51 |
| 4. | Yie Ar Kung-Fu | 335,138 | 1.57% | 6 | 2:07:25 |
| 5. | Fire Emblem Awakening | 251,814 | 1.18% | 60 | 1:07:01:23 |
| 6. | Romance of the Three Kingdoms | 250,806 | 1.17% | 122 | 2:22:01:04 |
| 7. | Dragon Quest | 236,575 | 1.11% | 295 | 4:21:55:31 |
| 8. | King of Kings | 204,180 | 0.95% | 162 | 3:17:05:14 |
| 9. | Super Famicom Wars | 190,836 | 0.89% | 136 | 2:19:56:27 |
| 10. | Nobunaga's Ambition II | 171,927 | 0.80% | 57 | 1:00:56:09 |
| 11. | Bases Loaded | 169,811 | 0.79% | 17 | 6:53:18 |
| 12. | Fire Emblem: Mystery of the Emblem | 164,619 | 0.77% | 54 | 1:03:23:40 |
| 13. | Super Batter Up | 152,812 | 0.71% | 52 | 21:56:10 |
| 14. | Final Fantasy III | 150,927 | 0.71% | 32 | 13:15:18 |
| 15. | Dragon Quest V: Hand of the Heavenly Bride | 146,432 | 0.68% | 43 | 19:06:34 |
| 16. | Advance Wars: Dual Strike | 132,137 | 0.62% | 47 | 19:53:09 |
| 17. | Lupin the 3rd: Treasure of the Sorcerer King | 131,297 | 0.61% | 23 | 9:29:43 |
| 18. | Dragon Ball Z: Budokai 3 | 128,518 | 0.60% | 21 | 5:20:34 |
| 19. | Nobunaga's Ambition: Lord of Darkness | 128,197 | 0.60% | 72 | 1:07:22:56 |
| 20. | Momotaro Dentetsu: Showa, Heisei, Reiwa mo Teiban! | 118,880 | 0.56% | 159 | 3:03:32:43 |
| 21. | Final Fantasy VI | 105,944 | 0.50% | 59 | 20:59:43 |
| 22. | Fire Emblem: Genealogy of the Holy War | 104,828 | 0.49% | 70 | 1:12:07:38 |
| 23. | Super Mario Bros. | 104,299 | 0.49% | 29 | 17:24:45 |
| 24. | FIFA 20 | 103,921 | 0.49% | 14 | 10:00:36 |
| 25. | Dragon Quest XI | 101,565 | 0.47% | 80 | 1:11:56:33 |
| 26. | Baseball | 97,720 | 0.46% | 35 | 11:20:24 |
| 27. | Dragon Quest VI: Realms of Revelation | 91,374 | 0.43% | 54 | 2:18:00:28 |
| 28. | Dragon Buster | 89,485 | 0.42% | 13 | 7:48:29 |
| 29. | Victorious Boxers 2: Fighting Spirit | 89,342 | 0.42% | 44 | 8:29:24 |
| 30. | Famista 64 | 87,982 | 0.41% | 36 | 16:28:16 |
| 31. | Raid on Bungeling Bay | 85,586 | 0.40% | 3 | 1:03:04 |
| 32. | The Legend of Zelda | 79,900 | 0.37% | 20 | 6:39:09 |
| 33. | Famicom Wars | 74,428 | 0.35% | 81 | 1:23:32:38 |
| 34. | Jaseiken Necromancer | 73,173 | 0.34% | 57 | 1:05:52:04 |
| 35. | J. League Soccer Prime Goal | 71,785 | 0.34% | 35 | 7:04:02 |
| 36. | Hotel Dusk: Room 215 | 70,861 | 0.33% | 22 | 11:47:26 |
| 37. | Family Circuit | 70,524 | 0.33% | 46 | 5:14:06 |
| 38. | Destiny of an Emperor | 68,613 | 0.32% | 33 | 12:53:42 |
| 39. | The Legend of Zelda: A Link to the Past | 67,829 | 0.32% | 24 | 11:34:49 |
| 40. | Super Soccer | 65,608 | 0.31% | 36 | 9:53:36 |
| 41. | Super Mario Bros. 3 | 59,200 | 0.28% | 12 | 13:57:06 |
| 42. | Yokai Dochuki | 58,977 | 0.28% | 3 | 56:09 |
| 43. | Torneko: The Last Hope | 58,739 | 0.27% | 52 | 1:22:11:20 |
| 44. | Adventure Island | 57,608 | 0.27% | 9 | 8:07:21 |
| 45. | Dragon Ball 3: Gokuden | 57,422 | 0.27% | 19 | 6:49:30 |
| 46. | Dragon Ball Z: Budokai 2 | 54,430 | 0.25% | 24 | 7:25:00 |
| 47. | Final Fantasy IX | 54,136 | 0.25% | 64 | 1:07:08:05 |
| 48. | Mario Bros. | 51,914 | 0.24% | 11 | 12:56:56 |
| 49. | Dragon Ball Z: Super Saiya Densetsu | 51,614 | 0.24% | 24 | 8:25:30 |
| 50. | Doraemon | 50,399 | 0.24% | 6 | 1:20:04 |
| 51. | Wrecking Crew | 50,181 | 0.23% | 37 | 14:52:36 |
| 52. | Donkey Kong | 48,738 | 0.23% | 4 | 27:14 |
| 53. | Final Fantasy Tactics | 46,964 | 0.22% | 48 | 20:51:24 |
| 54. | Bakushou!! Jinsei Gekijou | 46,622 | 0.22% | 6 | 3:02:45 |
| 55. | Fire Emblem: The Binding Blade | 46,427 | 0.22% | 86 | 1:20:31:33 |
| 56. | Famicom Jump: Hero Retsuden | 46,088 | 0.22% | 13 | 4:35:47 |
| 57. | Digital Devil Story: Megami Tensei | 45,936 | 0.21% | 3 | 49:04 |
| 58. | Last Window: The Secret of Cape West | 45,723 | 0.21% | 28 | 13:16:00 |
| 59. | Pooyan | 45,626 | 0.21% | 5 | 5:06:44 |
| 60. | Rupan Sansei: Columbus no Isan wa Ake ni Somaru | 44,270 | 0.21% | 11 | 4:58:38 |
| 61. | Super Mario World | 44,090 | 0.21% | 11 | 8:17:48 |
| 62. | Fire Emblem: Shadow Dragon and the Blade of Light | 43,464 | 0.20% | 29 | 22:29:18 |
| 63. | Dragon Quest II: Luminaries of the Legendary Line | 43,151 | 0.20% | 108 | 19:14:06 |
| 64. | Shining Force | 41,449 | 0.19% | 55 | 1:04:30:05 |
| 65. | F1 Race | 41,220 | 0.19% | 7 | 1:42:43 |
| 66. | Solomon's Key | 40,489 | 0.19% | 36 | 14:44:07 |
| 67. | Super Mahjong Taikai | 40,445 | 0.19% | 35 | 13:57:00 |
| 68. | 2nd Super Robot Wars | 40,345 | 0.19% | 2 | 52:34 |
| 69. | The Legend of the Mystical Ninja | 39,391 | 0.18% | 12 | 3:44:42 |
| 70. | Captain Tsubasa | 38,146 | 0.18% | 32 | 10:25:38 |
| 71. | Tag Team Match: M.U.S.C.L.E. | 38,011 | 0.18% | 4 | 57:05 |
| 72. | Dragon Quest III: The Seeds of Salvation | 37,789 | 0.18% | 10 | 4:00:45 |
| 73. | Mega Man | 37,784 | 0.18% | 24 | 17:10:30 |
| 74. | Jikkyou Powerful Pro Yakyuu 4 | 37,595 | 0.18% | 16 | 7:39:45 |
| 75. | Romance of the Three Kingdoms II | 37,262 | 0.17% | 1 | 9:15 |
| 76. | Ninja Hattori-kun | 34,889 | 0.16% | 2 | 34:55 |
| 77. | Zelda II: The Adventure of Link | 34,849 | 0.16% | 15 | 4:58:01 |
| 78. | Pac-Man | 34,114 | 0.16% | 10 | 4:28:58 |
| 79. | The Portopia Serial Murder Case | 33,692 | 0.16% | 4 | 2:39:14 |
| 80. | Kung-Fu Master | 33,556 | 0.16% | 9 | 1:47:02 |
| 81. | Super Mario Maker | 32,367 | 0.15% | 43 | 1:15:26:50 |
| 82. | Final Fantasy | 32,296 | 0.15% | 61 | 22:38:21 |
| 83. | Pro Evolution Soccer | 32,120 | 0.15% | 14 | 4:44:32 |
| 84. | J.B. Harold Murder Club | 31,952 | 0.15% | 13 | 4:48:44 |
| 85. | The Goonies | 31,823 | 0.15% | 4 | 1:56:03 |
| 86. | R.B.I. Baseball | 31,581 | 0.15% | 1 | 14:55 |
| 87. | Secret of Mana | 31,562 | 0.15% | 20 | 7:58:27 |
| 88. | The Tower of Druaga | 31,174 | 0.15% | 23 | 9:41:38 |
| 89. | Bomberman | 31,103 | 0.15% | 6 | 2:33:44 |
| 90. | F-Zero | 28,983 | 0.14% | 7 | 5:17:17 |
| 91. | Shin Onigashima | 28,756 | 0.13% | 13 | 3:52:13 |
| 92. | Tecmo Cup Soccer Game | 28,420 | 0.13% | 17 | 6:55:45 |
| 93. | Lode Runner | 27,962 | 0.13% | 30 | 7:57:41 |
| 94. | Landstalker | 27,488 | 0.13% | 51 | 1:02:54:03 |
| 95. | Tantei Jinguuji Saburo: Mikan no Report | 27,383 | 0.13% | 8 | 3:26:11 |
| 96. | Pro Evolution Soccer 2008 | 26,839 | 0.13% | 19 | 5:17:21 |
| 97. | Super Mario RPG | 26,029 | 0.12% | 31 | 12:37:54 |
| 98. | Dragon Ball Z: Kyoushuu! Saiyajin | 25,698 | 0.12% | 11 | 3:44:55 |
| 99. | Milon's Secret Castle | 25,013 | 0.12% | 7 | 5:29:07 |
| 100. | Military Madness | 24,134 | 0.11% | 59 | 1:05:26:04 |
