| 1. | Tear Ring Saga | 89,909 | 11.77% | 55 | 1:13:07:17 |
| 2. | Sonic the Hedgehog 2 | 49,226 | 6.45% | 30 | 3:02:40 |
| 3. | Sonic CD | 38,951 | 5.10% | 28 | 3:15:04 |
| 4. | Romancing SaGa 2 | 37,476 | 4.91% | 72 | 1:07:48:34 |
| 5. | Fire Emblem: Genealogy of the Holy War | 35,931 | 4.70% | 138 | 4:03:10:59 |
| 6. | Romancing SaGa | 31,495 | 4.12% | 47 | 1:02:09:49 |
| 7. | Chrono Trigger | 18,036 | 2.36% | 35 | 16:49:20 |
| 8. | Fire Emblem: Mystery of the Emblem | 16,855 | 2.21% | 79 | 1:16:59:54 |
| 9. | Romancing SaGa 3 | 16,757 | 2.19% | 48 | 23:18:10 |
| 10. | Fire Emblem | 16,667 | 2.18% | 29 | 6:19:43 |
| 11. | Live A Live | 15,636 | 2.05% | 66 | 23:26:14 |
| 12. | Sailor Moon | 14,265 | 1.87% | 10 | 4:24:49 |
| 13. | Fire Emblem: The Sacred Stones | 13,800 | 1.81% | 35 | 23:16:58 |
| 14. | Final Fantasy VI | 12,729 | 1.67% | 93 | 1:19:50:12 |
| 15. | Final Fantasy V | 11,418 | 1.49% | 36 | 16:10:51 |
| 16. | Golden Sun: The Lost Age | 11,205 | 1.47% | 42 | 19:01:32 |
| 17. | Fire Emblem: The Binding Blade | 8,892 | 1.16% | 67 | 1:14:13:04 |
| 18. | Mario Kart 64 | 8,792 | 1.15% | 1 | 58:11 |
| 19. | Unlimited Saga | 8,733 | 1.14% | 201 | 6:18:26:22 |
| 20. | Castlevania: Harmony of Dissonance | 8,286 | 1.08% | 29 | 8:54:37 |
| 21. | Imperial SaGa | 7,499 | 0.98% | 64 | 23:57:05 |
| 22. | Golden Sun | 7,156 | 0.94% | 46 | 20:47:46 |
| 23. | Tales of Phantasia | 6,899 | 0.90% | 5 | 2:11:17 |
| 24. | Fire Emblem: Thracia 776 | 6,808 | 0.89% | 54 | 1:09:44:09 |
| 25. | Trials of Mana | 6,773 | 0.89% | 41 | 21:07:22 |
| 26. | Fire Emblem Gaiden | 6,697 | 0.88% | 47 | 1:00:08:07 |
| 27. | SaGa Frontier | 6,066 | 0.79% | 171 | 4:01:54:38 |
| 28. | Densetsu no Stafy 3 | 5,927 | 0.78% | 37 | 14:28:38 |
| 29. | Sonic Advance 3 | 5,251 | 0.69% | 16 | 2:57:56 |
| 30. | Sutte Hakkun | 5,134 | 0.67% | 62 | 9:21:56 |
| 31. | Fire Emblem: Archanea Saga | 4,951 | 0.65% | 4 | 2:31:27 |
| 32. | Super Smash Bros. Melee | 4,830 | 0.63% | 11 | 2:46:44 |
| 33. | SaGa Frontier 2 | 4,319 | 0.57% | 62 | 1:05:56:16 |
| 34. | Chrono Cross | 4,106 | 0.54% | 46 | 1:16:24:59 |
| 35. | Final Fantasy IV: The After Years | 4,040 | 0.53% | 19 | 8:23:45 |
| 36. | Mega Man | 4,011 | 0.53% | 51 | 11:51:53 |
| 37. | Teenage Mutant Ninja Turtles 2: Battle Nexus | 3,999 | 0.52% | 11 | 6:26:46 |
| 38. | Sonic the Hedgehog 3 | 3,876 | 0.51% | 24 | 4:09:36 |
| 39. | Densetsu no Stafy | 3,696 | 0.48% | 27 | 14:37:32 |
| 40. | Rhapsody III: Memories of Marl Kingdom | 3,589 | 0.47% | 20 | 15:27:36 |
| 41. | Arcana Heart 3 | 3,376 | 0.44% | 47 | 1:13:30:22 |
| 42. | Densetsu no Stafy 2 | 3,363 | 0.44% | 29 | 8:37:21 |
| 43. | Mega Man X6 | 2,888 | 0.38% | 9 | 3:24:38 |
| 44. | Naruto: Ultimate Ninja 2 | 2,643 | 0.35% | 2 | 1:18:26 |
| 45. | Pokémon Mystery Dungeon: Explorers of Time and Explorers of Darkness | 2,594 | 0.34% | 1 | 8:43 |
| 46. | Castlevania: Aria of Sorrow | 2,422 | 0.32% | 21 | 7:16:18 |
| 47. | Nuga-Cel! | 2,414 | 0.32% | 26 | 15:01:31 |
| 48. | Suggoi! Arcana Heart 2 | 2,262 | 0.30% | 25 | 15:56:34 |
| 49. | Imperishable Night | 2,243 | 0.29% | 28 | 1:10:44 |
| 50. | Castlevania: Portrait of Ruin | 1,952 | 0.26% | 36 | 14:44:41 |
| 51. | Princess Maker | 1,914 | 0.25% | 1 | 4:18 |
| 52. | Final Fantasy III | 1,797 | 0.24% | 37 | 12:13:53 |
| 53. | Final Fantasy IV | 1,796 | 0.24% | 13 | 5:59:30 |
| 54. | Naruto: Clash of Ninja 2 | 1,706 | 0.22% | 7 | 2:15:34 |
| 55. | Densetsu no Stafy 4 | 1,489 | 0.19% | 29 | 20:00:54 |
| 56. | Princess Minerva | 1,457 | 0.19% | 1 | 2:02 |
| 57. | Super Wagyan Land 2 | 1,429 | 0.19% | 11 | 4:09:33 |
| 58. | Puyo Puyo Sun | 1,414 | 0.19% | 13 | 8:51:33 |
| 59. | Koudelka | 1,408 | 0.18% | 16 | 10:03:19 |
| 60. | Nage Libre: Seijaku no Suishin | 1,315 | 0.17% | 2 | 1:15:00 |
| 61. | Final Fantasy | 1,241 | 0.16% | 9 | 3:25:09 |
| 62. | Shoot the Bullet | 1,165 | 0.15% | 22 | 1:43:50 |
| 63. | Castlevania: Symphony of the Night | 1,152 | 0.15% | 39 | 19:51:12 |
| 64. | Fire Emblem: Shadow Dragon and the Blade of Light | 1,106 | 0.14% | 32 | 16:26:25 |
| 65. | Metal Slug 4 | 1,036 | 0.14% | 1 | 44:26 |
| 66. | Mystic Square | 1,034 | 0.14% | 1 | 42:47 |
| 67. | Impossible Spell Card | 996 | 0.13% | 16 | 1:33:36 |
| 68. | Wagyan Paradise | 975 | 0.13% | 10 | 2:51:40 |
| 69. | Naruto: Ultimate Ninja Storm | 975 | 0.13% | 8 | 2:46:20 |
| 70. | Spyro the Dragon | 955 | 0.13% | 13 | 5:05:57 |
| 71. | Double Spoiler | 864 | 0.11% | 22 | 1:58:02 |
| 72. | Legacy of Lunatic Kingdom | 852 | 0.11% | 4 | 36:48 |
| 73. | Naruto: Ultimate Ninja 3 | 818 | 0.11% | 8 | 5:38:13 |
| 74. | Psycho Soldier | 791 | 0.10% | 1 | 38:13 |
| 75. | Sonic the Hedgehog | 777 | 0.10% | 11 | 1:43:22 |
| 76. | Hyperdimension Neptunia | 770 | 0.10% | 60 | 2:07:00:23 |
| 77. | Rhapsody: A Musical Adventure | 761 | 0.10% | 7 | 4:03:08 |
| 78. | RPG Maker 2003 | 745 | 0.10% | 9 | 3:02:32 |
| 79. | Super Mario World 2: Yoshi's Island | 741 | 0.10% | 19 | 6:07:16 |
| 80. | Mega Man 7 | 722 | 0.09% | 17 | 6:05:01 |
| 81. | The Legend of Zelda | 706 | 0.09% | 37 | 1:00:38:24 |
| 82. | The Final Battle | 698 | 0.09% | 2 | 1:22:32 |
| 83. | Street Fighter | 689 | 0.09% | 1 | 20:10 |
| 84. | Castlevania: Order of Ecclesia | 680 | 0.09% | 32 | 11:02:06 |
| 85. | Immaterial and Missing Power | 648 | 0.08% | 10 | 6:36:13 |
| 86. | Phantasmagoria of Flower View | 638 | 0.08% | 13 | 7:28:23 |
| 87. | Wagyan Land 3 | 619 | 0.08% | 6 | 2:03:10 |
| 88. | Langrisser II | 605 | 0.08% | 1 | 5:50 |
| 89. | Kirby: Nightmare in Dream Land | 591 | 0.08% | 12 | 1:10:15 |
| 90. | Hopeless Masquerade | 569 | 0.07% | 11 | 7:33:45 |
| 91. | Kirby's Adventure | 558 | 0.07% | 9 | 57:36 |
| 92. | Naruto: Ultimate Ninja | 550 | 0.07% | 4 | 1:29:04 |
| 93. | Lotus Land Story | 524 | 0.07% | 4 | 1:02:55 |
| 94. | Final Fight 2 | 490 | 0.06% | 1 | 56:53 |
| 95. | Castlevania: Dawn of Sorrow | 486 | 0.06% | 27 | 11:31:46 |
| 96. | Twinkle Star Sprites | 482 | 0.06% | 2 | 36:19 |
| 97. | Sonic the Hedgehog: Triple Trouble | 480 | 0.06% | 6 | 59:14 |
| 98. | Sonic Advance 2 | 464 | 0.06% | 9 | 1:09:51 |
| 99. | Puyo Puyo 2 | 440 | 0.06% | 9 | 6:02:39 |
| 100. | Highly Responsive to Prayers | 434 | 0.06% | 4 | 37:38 |
